TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR821c

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

AAGUCAUCAACAUAAAAGUUG

miRBase

Precursor miRNA Sequence(5'-3')

UAAAUGAUUUUAGCUAAAAAAGUCAUCAACAUAAAAGUUGUAGAACUGGUCAAGAUCUCUAAUUUUUAUUUUAGUCAUUUUUUCAUAUGACAAAGUAAUAGUAACAUUGGUCAUAAAUUUUACAUAUCUCUGAUAUAGUUUCAUAAACUAUAUGAGAGAUAUGUAAAAUUUAUGAACAAUGUUACUAUUACUUUGCCGGAUGAAUAAAUGACCAGAAUAAAAGUUGUAGAUCUUGAUGAGUUGUACAACUUGUAUAUUCAUGACUUUAUCACCUAAAAUCAUUUA

miRBase

Precursor miRNA Structure(5'-3') 

             CUAAA        C  C   A        G    G          C             A       U     A  A                   G                     G           
UAAAUGAUUUUAG     AAAGUCAU AA AUA AAGUUGUA AACU GUCAAGAUCU UAAUUUUUAUUUU GUCAUUU UUCAU UG CAAAGUAAUAGUAACAUUG UCAUAAAUUUUACAUAUCUCU AUAUAGUUUC 
|||||||||||||     |||||||| || ||| |||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| A
AUUUACUAAAAUC     UUUCAGUA UU UAU UUCAACAU UUGA UAGUUCUAGA GUUGAAAAUAAGA CAGUAAA AAGUA GC GUUUCAUUAUCAUUGUAAC AGUAUUUAAAAUGUAUAGAGA UAUAUCAAAA 
             CACUA        C  A   G        G    G          U             C       U     G  C                   A                     G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sbi-miR821a      AAGUCAUCAACAUAAAAGUUG---
sbi-miR821e      AAGUCAUCAAAAUAAAAGUUG---
sbi-miR821b      AAGUUAUGAACAUAAAAGUUG---
osa-miR821a      AAGUCAUCAACAAAAAAGUUGAAU
sbi-miR821d      AAGUCAUCAACAACAAAGUUG---
osa-miR821b      AAGUCAUCAACAAAAAAGUUGAAU
osa-miR821c      AAGUCAUCAACAAAAAAGUUGAAU
sbi-miR821c      AAGUCAUCAACAUAAAAGUUG---
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