TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR821a

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

AAGUCAUCAACAUAAAAGUUG

miRBase

Precursor miRNA Sequence(5'-3')

UAAAUGAUUUCAGCUAAAAAAGUCAUCAACAUAAAAGUUGUAAAACUGGUCAAGAUCUCCAAUUUUUAUUUUAGUCAUUUUUUCAUAUGACAAAGUAAUAGUAACAUUGUUCAUAAAUUUUACAUAUCUCUGAUAUAGUUUCAUAAACUAUAUGAGAGAUAUGUAAAAUUUAUGAACAAUGUUACUAUUACUUUGUCGGAUGAAUAAAUAACCAAAAUAAAAGUUGUAGAUCUUGAUGAGUUGUACAACUUGUAUAUUCAUAACUUUAUCAACUAAAAUCAUUUA

miRBase

Precursor miRNA Structure(5'-3') 

          C  CUAAA     C  C  C   A        A    G          C             A  C    U     A                                            G           
UAAAUGAUUU AG     AAAGU AU AA AUA AAGUUGUA AACU GUCAAGAUCU CAAUUUUUAUUUU GU AUUU UUCAU UGACAAAGUAAUAGUAACAUUGUUCAUAAAUUUUACAUAUCUCU AUAUAGUUUC 
|||||||||| ||     ||||| || || ||| |||||||| |||| |||||||||| ||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| A
AUUUACUAAA UC     UUUCA UA UU UAU UUCAACAU UUGA UAGUUCUAGA GUUGAAAAUAAAA CA UAAA AAGUA GCUGUUUCAUUAUCAUUGUAACAAGUAUUUAAAAUGUAUAGAGA UAUAUCAAAA 
          A  AACUA     A  C  A   G        G    G          U             C  A    U     G                                            G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sbi-miR821a      AAGUCAUCAACAUAAAAGUUG---
sbi-miR821e      AAGUCAUCAAAAUAAAAGUUG---
sbi-miR821b      AAGUUAUGAACAUAAAAGUUG---
osa-miR821a      AAGUCAUCAACAAAAAAGUUGAAU
sbi-miR821d      AAGUCAUCAACAACAAAGUUG---
osa-miR821b      AAGUCAUCAACAAAAAAGUUGAAU
osa-miR821c      AAGUCAUCAACAAAAAAGUUGAAU
sbi-miR821c      AAGUCAUCAACAUAAAAGUUG---
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