TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR5568c-5p

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

UCUGUUCCAAAUUGUAAGUCG

miRBase

Precursor miRNA Sequence(5'-3')

GUACUCCAUCUGUUCCAAAUUGUAAGUCGUUUUGGCUUUCUUAAAUACAUAGUUUUUACUAUGCAUAUAGACACAGUGCAUAUGUUUUUUUGCAUAGCAAAAGCUAUGUACCCAGGAAAGCCAAAACAACUUACAGUUUGGAACGGAGGGAGUAC

miRBase

Precursor miRNA Structure(5'-3') 

       A                   C              AAA            A       UAU     CAG 
GUACUCC UCUGUUCCAAAUUGUAAGU GUUUUGGCUUUCUU   UACAUAGUUUUU CUAUGCA   AGACA   U
||||||| ||||||||||||||||||| ||||||||||||||   |||||||||||| |||||||   |||||   G
CAUGAGG AGGCAAGGUUUGACAUUCA CAAAACCGAAAGGA   AUGUAUCGAAAA GAUACGU   UUUGU   U
       G                   A              CCC            C       UUU     AUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR6197          UCUGUUCCUAAAUGUAAGACG
sbi-miR5568c-5p      UCUGUUCCAAAUUGUAAGUCG
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