TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR6197

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

UCUGUUCCUAAAUGUAAGACG

miRBase

Precursor miRNA Sequence(5'-3')

UUGUACACCCUCUGUUCCUAAAUGUAAGACGUNUUUGGCAGNNCAAUUNGAACUGCCAAAACAUCUUACAUUUANAAACAGAGGUAGUACUA

miRBase

Precursor miRNA Structure(5'-3') 

UU    AC        CC           C  N        NNCA 
  GUAC  CCUCUGUU  UAAAUGUAAGA GU UUUGGCAG    A
  ||||  ||||||||  ||||||||||| || ||||||||    U
  CAUG  GGAGACAA  AUUUACAUUCU CA AAACCGUC    G
AU    AU        AN           A  -        AAGN

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR6197          UCUGUUCCUAAAUGUAAGACG
sbi-miR5568c-5p      UCUGUUCCAAAUUGUAAGUCG
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