TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR397-3p

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

UCACCGGCGCUGCACUCAAUU

miRBase

Precursor miRNA Sequence(5'-3')

UCAUUGAGUGCAGCGUUGAUGAGCCAGCUGGCCGGCCAGCCGUGCGUCCGCCGCCGGCGCCGGCCACGGCUCACCGGCGCUGCACUCAAUU

miRBase

Precursor miRNA Structure(5'-3') 

UC                A      A C        CA    U   U 
  AUUGAGUGCAGCGUUG UGAGCC G UGGCCGGC  GCCG GCG C
  |||||||||||||||| |||||| | ||||||||  |||| ||| C
  UAACUCACGUCGCGGC ACUCGG C ACCGGCCG  CGGC CGC C
-U                C      - -        --    -   C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR397-5p      UCACCGGCGCUGCACACAAUG
sbi-miR397-3p      UCACCGGCGCUGCACUCAAUU
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