TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR397-5p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UCACCGGCGCUGCACACAAUG

miRBase

Precursor miRNA Sequence(5'-3')

CGCAAAGGUGCCAUUGAGUGCAGCGUUGAUGAACCGUCCUACUCCUCCGAGGCCGGAGCGGUUCACCGGCGCUGCACACAAUGACGGCUCUGC

miRBase

Precursor miRNA Structure(5'-3') 

C   A  G  C     A           A       -   -UA   C 
 GCA AG UG CAUUG GUGCAGCGUUG UGAACCG UCC   CUC U
 ||| || || ||||| ||||||||||| ||||||| |||   |||  
 CGU UC GC GUAAC CACGUCGCGGC ACUUGGC AGG   GAG G
-   C  G  A     A           C       G   CCG   C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR397-5p      UCACCGGCGCUGCACACAAUG
sbi-miR397-3p      UCACCGGCGCUGCACUCAAUU
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