TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR171c

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

GAGGUGAGCCGAGCCAAUAUC

miRBase

Precursor miRNA Sequence(5'-3')

AGAACGAGACGACAUGGCAUGGUAUUGACUUGGCUCAUCUCUCAUCCACAGCAAACUUCACAAGUGCCUGAGGUGAGCCGAGCCAAUAUCACUUCAUGUCAUCUAGCGU

miRBase

Precursor miRNA Structure(5'-3') 

AGA   --   C       CA        A             UCAUC   AGCAAA 
   ACG  AGA GACAUGG  UGGUAUUG CUUGGCUCAUCUC     CAC      C
   |||  ||| |||||||  |||||||| |||||||||||||     |||       
   UGC  UCU CUGUACU  ACUAUAAC GAGCCGAGUGGAG     GUG      C
---   GA   A       UC        C             --UCC   AACACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR171g         GAGGUGAGCCGAGCCAAUAUC
zma-miR171g-3p      GAGGUGAGCCGAGCCAAUAUC
sbi-miR171c         GAGGUGAGCCGAGCCAAUAUC
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