TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR171g

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GAGGUGAGCCGAGCCAAUAUC

miRBase

Precursor miRNA Sequence(5'-3')

GACAUGGCAUGGUAUUGACUUGGCUCAUCUCAGCAACAGCAAACUGCAUGCAGCGCUGGAGGUGAGCCGAGCCAAUAUCACUUCAUGUC

miRBase

Precursor miRNA Structure(5'-3') 

       CA        A             AGCAA    AAA   C 
GACAUGG  UGGUAUUG CUUGGCUCAUCUC     CAGC   CUG A
|||||||  |||||||| |||||||||||||     ||||   |||  
CUGUACU  ACUAUAAC GAGCCGAGUGGAG     GUCG   GAC C
       UC        C             -----    --C   G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR171g         GAGGUGAGCCGAGCCAAUAUC
zma-miR171g-3p      GAGGUGAGCCGAGCCAAUAUC
sbi-miR171c         GAGGUGAGCCGAGCCAAUAUC
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