TarDB

Precursor miRNA Sequence(5'-3')

GGUGACUGAUUUCCAUGCUAAACCUCGUCAAGUGAACAGUUUUCUUUCAGGUUAUAUCUUUAUCUCGUUGUCUGUUCGACCUUGAACUUCAACUUCAUUUUUAUUAUUUAUAUGCAUAAUUAUUCAUUCUGAAUCUGCACUGCACCCUUUCCCUGUCCACACACACUCACGAAAACUAACAUAUAGCAGCCGUUUCGAUAAAUCGAAAUCAAGUUUAAUCCUCUGCAUUUUAUAACAUUGAUUGAGUAAGUAGAGAUCUCAAGUUUAGGUCAUAAAUCGGAAAGUAAUUAUUUUGUGGUAAUGAACUAAUAAUAAGCUGAGAUCAAGGUCAAACAGGCAACAAAGUUGAGGUAUUAGUAAGAACUGUUUGCUUGACGGGGGCUUUGUAUGGACAUCAACCUCC

miRBase

Precursor miRNA Structure(5'-3')

---   GAC    U       -UAAA                  UU    UCAGGUU       UAUCUC          C        ACUUCAACUUCAUUUUUAUUAUUUAUAUGCAUAAUUAUUCAUUCUGAAUCUGCACUGCACCCUUUCCCUGUCCACACACACUCACGAAAACUAACAUAUAGCAGCCGUUUCGAUAAA 
   GGU   UGAU UCCAUGC     CCUCGUCAAGUGAACAGU  UCUU       AUAUCUU      GUUGUCUGUU GACCUUGA                                                                                                                     U
   |||   |||| |||||||     ||||||||||||||||||  ||||       |||||||      |||||||||| ||||||||                                                                                                                     C
   CCA   ACUA AGGUAUG     GGGGCAGUUCGUUUGUCA  AGAA       UAUGGAG      CAACGGACAA CUGGAACU                                                                                                                     A
CCU   ---    C       UUUCG                  --    ---UGAU       UUGAAA          A        AGAGUCGAAUAAUAAUCAAGUAAUGGUGUUUUAUUAAUGAAAGGCUAAAUACUGGAUUUGAACUCUAGAGAUGAAUGAGUUAGUUACAAUAUUUUACGUCUCCUAAUUUGAACUAAA

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.