TarDB

Precursor miRNA Sequence(5'-3')

CAUGCUAUGCUUGUCAAGUGAGCAGUCCUUUGCAAAUUAAUCUUAGUUUCGUUGUCUGUUCGACCUGAAACUACGGUAAAGGCUAGGUAUAUAGUACCCCUGAAAACCCUAAUUAGAAAGUAAUCAUGUUUUUUUAUAUAGAUUAAUCAACUUGAUUGACCAUCUAACAAAUUAAACAAGGCAGCUUCGUAUUAUAGAUAACUAUAUAUUGYGUAGCAUCUUGGUAUUUGACCUCGUAACCUAAAUUAUAGAGUUACUUUAAUGCAUAAAAGAGUCAUUAACCUAGAAAGAAGAAAGUAAAUUAAAACUCCCAAUCUUAAUCCUGUUUAUGCAUUUAUUGGAUAAUUCAUUUGGAAAGUGGUUUAGGUAUAUCUUUUGGCUCCUUCUUUUCCUUUCGAAAUAUGAAGAAGAAAGCAAUUGAAAAAAUAGUAAUAGGCUGGMUAUAAGUUUCUAAGUACCCCUUUGCGGUAAUCUAACAUAACUUUGAUAGUCGUUGGACUUUUACCCUAGGUUUUGCAGUUGCAGCCCGGUAUCGAUUUUUCAGGUGUAUAUAUGUAGGUUACACACCCAAAUCCAGUCCAAAAAGUAGGCAGCCUUAUGCUCWUUUUGUUUUUACCAAGACAUAUAAUCAUCUUUAAUAUCAAAUACCUGAACUCACUGUACUAAUUAAAUUGGAUGUGAAACCAAUCUAGUUACCAAUUUAGAUUAAGUUGCUUCCACAAAAGCAUUUUCUUGCUUUCGAACUGCAGAAUAAUUAGCAUGAGCCGUAUAAGUACAUCCUUAAUUAGAAAAAUAAUGUGGCUAGGAGGGACCGAGUAGUGACUAGCUAGCUAGCCUGCUACCAUGGAAUGUUGAUAGGUCGAACAGACAGCGAACCUGAAGUACAAGCAAGAGACUGUUCAUUUGACAAGGGUUUGCAUG

miRBase

Precursor miRNA Structure(5'-3')

     -U  G                  C     AAAUUA  C    U                    -A   ----  C    -A       G  UA    -  CC  GAAAA    AAUUAGAAAGUAAUCAUGUUUUUUUAUAUAGAUUAAUCAACUUGAUUGACCAUCUAACAAAUUAAACAAGGCAGCUUCGUAUUAUAGAUAACUAUAUAUUGYGUAGCAUCUUGGUAUUUGACCUCGUAACCUAAAUUAUAGAGUUACUUUAAUGCAUAAAAGAGUCAUUAACCUAGAAAGAAGAAAGUAAAUUAAAACUCCCAAUCUUAAUCCUGUUUAUGCAUUUAUUGGAUAAUUCAUUUGGAAAGUGGUUUAGGUAUAUCUUUUGGCUCCUUCUUUUCCUUUCGAAAUAUGAAGAAGAAAGCAAUUGAAAAAAUAGUAAUAGGCUGGMUAUAAGUUUCUAAGUA 
CAUGC  AU CUUGUCAAGUGAGCAGUC UUUGC      AU UUAG UUCGUUGUCUGUUCGACCUG  AAC    UA GGUA  AGGCUAG UA  UAGU AC  CU     CCCU                                                                                                                                                                                                                                                                                                                                                           C
|||||  || |||||||||||||||||| |||||      || |||| ||||||||||||||||||||  |||    || ||||  ||||||| ||  |||| ||  ||     ||||                                                                                                                                                                                                                                                                                                                                                            
GUACG  UG GAACAGUUUACUUGUCAG GAACG      UG AGUC AAGCGACAGACAAGCUGGAU  UUG    GU CCAU  UCCGAUC AU  AUCA UG  GA     GGGA                                                                                                                                                                                                                                                                                                                                                           C
     UU  G                  A     --AACA  A    C                    AG   UAAG  A    CG       G  CG    G  AU  -GCCA    GGAUCGGUGUAAUAAAAAGAUUAAUUCCUACAUGAAUAUGCCGAGUACGAUUAAUAAGACGUCAAGCUUUCGUUCUUUUACGAAAACACCUUCGUUGAAUUAGAUUUAACCAUUGAUCUAACCAAAGUGUAGGUUAAAUUAAUCAUGUCACUCAAGUCCAUAAACUAUAAUUUCUACUAAUAUACAGAACCAUUUUUGUUUUWCUCGUAUUCCGACGGAUGAAAAACCUGACCUAAACCCACACAUUGGAUGUAUAUAUGUGGACUUUUUAGCUAUGGCCCGACGUUGACGUUUUGGAUCCCAUUUUCAGGUUGCUGAUAGUUUCAAUACAAUCUAAUGGCGUUUCC

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.