TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



ppe-miR1511-3p
Prunus persica

Species
AUCGUGGUAUCAGAGUCAUGUUAUUUGCAUGUUGCCACCACAUAUGUGUUGCUCAUAUAAAUAACCUGGCUCUGAUACCAUAAC

miRBase
AUC               U        C   UU  CAC   A 
   GUGGUAUCAGAGUCA GUUAUUUG AUG  GC   CAC U
   ||||||||||||||| |||||||| |||  ||   |||  
   UACCAUAGUCUCGGU CAAUAAAU UAC  CG   GUG G
CAA               C        A   -U  -UU   U 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR1511         -AACCUGGCUCUGAUACCAUGAAGU--
gma-miR1511         -AACCAGGCUCUGAUACCAUG------
cpa-miR8155         UAACCUGGCUCUGAUACCA--------
ppe-miR1511-3p      --ACCUGGCUCUGAUACCAUAAC----
mdm-miR1511         --ACCUAGCUCUGAUACCAUGAA----
fve-miR1511         --ACCUAGCUCUGAUACCAUGUG----
bdi-miR7782-3p      --ACCU-GCUCUGAUACCAUGUUGUGA
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