TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1511

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AACCAGGCUCUGAUACCAUG

miRBase

Precursor miRNA Sequence(5'-3')

UCAGCCGUGGUAUCAGGUCCUGCUUCAUCAAGUGGUCUUGUGUUCAAAUCCAGCCUCAAGCACAUGGUUAACCAGGCUCUGAUACCAUGGUGAAUAUAA

miRBase

Precursor miRNA Structure(5'-3') 

------   G             U    C  C    A   GU    -U   CA 
      UCA CCGUGGUAUCAGG CCUG UU AUCA GUG  CUUG  GUU  A
      ||| ||||||||||||| |||| || |||| |||  ||||  |||  A
      AGU GGUACCAUAGUCU GGAC AA UGGU CAC  GAAC  CGA  C
AAUAUA   -             C    C  U    A   --    UC   CC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR1511         -AACCUGGCUCUGAUACCAUGAAGU--
gma-miR1511         -AACCAGGCUCUGAUACCAUG------
cpa-miR8155         UAACCUGGCUCUGAUACCA--------
ppe-miR1511-3p      --ACCUGGCUCUGAUACCAUAAC----
mdm-miR1511         --ACCUAGCUCUGAUACCAUGAA----
fve-miR1511         --ACCUAGCUCUGAUACCAUGUG----
bdi-miR7782-3p      --ACCU-GCUCUGAUACCAUGUUGUGA
                      ***  ************