TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR1511

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

ACCUAGCUCUGAUACCAUGUG

miRBase

Precursor miRNA Sequence(5'-3')

CAUUGGUGUUGAUUCAAACAAGUGGUAUCAGGGCUAUGUUAAACUAGGAUGCAUCUUGAUCUGGUUGCUUCAAGUCUGACCUAGCUCUGAUACCAUGUGUUACUGACUUCACCAUGG

miRBase

Precursor miRNA Structure(5'-3') 

-   U    UU AU   --    A               U    A   A   U   U  UG 
 CAU GGUG  G  UCA  AACA GUGGUAUCAGGGCUA GUUA ACU GGA GCA CU  A
 ||| ||||  |  |||  |||| ||||||||||||||| |||| ||| ||| ||| ||   
 GUA CCAC  C  AGU  UUGU UACCAUAGUCUCGAU CAGU UGA CUU CGU GG  U
G   -    UU --   CA    G               C    C   A   -   U  UC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR1511         -AACCUGGCUCUGAUACCAUGAAGU--
gma-miR1511         -AACCAGGCUCUGAUACCAUG------
cpa-miR8155         UAACCUGGCUCUGAUACCA--------
ppe-miR1511-3p      --ACCUGGCUCUGAUACCAUAAC----
mdm-miR1511         --ACCUAGCUCUGAUACCAUGAA----
fve-miR1511         --ACCUAGCUCUGAUACCAUGUG----
bdi-miR7782-3p      --ACCU-GCUCUGAUACCAUGUUGUGA
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