TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR2606b

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UACAAUUCCUUAGGUGCUUUU

miRBase

Precursor miRNA Sequence(5'-3')

AGGAGAAAACUUAGGUACAAUUCCUUAGGUGCUUUUUGUAUGGUUCUUUACUAAAUUUACCAUGAUUUCCUCAAAUGCAUAAUUUUCUCAAAGUUUGUUAUAUCCAAAUAAUAUGUAUUUUUAGUUAAGAACCAUAUGAAAAGCACAUAAGGAAUUGUACCUAAGUUUUCUCCA

miRBase

Precursor miRNA Structure(5'-3') 

A                          G                    U      UU   -CAUG    CCUCAAAU   U        
 GGAGAAAACUUAGGUACAAUUCCUUA GUGCUUUUUGUAUGGUUCUU ACUAAA  UAC     AUUU        GCA AAUUUUC 
 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||     ||||        ||| |||||| U
 CCUCUUUUGAAUCCAUGUUAAGGAAU CACGAAAAGUAUACCAAGAA UGAUUU  AUG     UAAA        UGU UUGAAAA 
A                          A                    U      UU   UAUAA    -CCUAUAU   -

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2606a      AAAAGCACUUAAGGAACGGUA
gma-miR2606b      AAAAGCACUUAAGGAACGGUA
mtr-miR2606a      UACAAUUCCUUAGGUGCUUUU
mtr-miR2606b      UACAAUUCCUUAGGUGCUUUU
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