TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2606a

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AAAAGCACUUAAGGAACGGUA

miRBase

Precursor miRNA Sequence(5'-3')

AAAGCUUAUAUACAGUUCCUUAGGUUCUUUUGGUGCUCUUCUUCAUCAAUUAGAAUCGAAGUUUCACCUUGAUAAUCUCUUAAUAAAGGUUUGCAUUAAAGAUCAACAUAAAUUACCGAGUUGAAAUUCCAAUUUUGAUUGAAGAAUAGCACCAAAAGCACUUAAGGAACGGUAUCUAAGUUUC

miRBase

Precursor miRNA Structure(5'-3') 

A       U    A           U           C       UCA        C A       C    A    CUC   AUAAA     GC 
 AAGCUUA AUAC GUUCCUUAGGU CUUUUGGUGCU UUCUUCA   AUUAGAAU G AGUUUCA CUUG UAAU   UUA     GGUUU  A
 ||||||| |||| ||||||||||| ||||||||||| |||||||   |||||||| | ||||||| |||| ||||   |||     |||||  U
 UUUGAAU UAUG CAAGGAAUUCA GAAAACCACGA AAGAAGU   UAGUUUUA C UUAAAGU GAGC AUUA   AAU     CUAGA  A
C       C    G           C           U       ---        A C       U    C    ---   -ACAA     AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2606a      AAAAGCACUUAAGGAACGGUA
gma-miR2606b      AAAAGCACUUAAGGAACGGUA
mtr-miR2606a      UACAAUUCCUUAGGUGCUUUU
mtr-miR2606b      UACAAUUCCUUAGGUGCUUUU
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