TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR2606a

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UACAAUUCCUUAGGUGCUUUU

miRBase

Precursor miRNA Sequence(5'-3')

CGAUUAGGAGAAAACUUAGGUACAAUUCCUUAGGUGCUUUUCGUAUGGUUCUUAAUUAAAAAUACAUAUUUUUUGGAUAUAACAAACUUUGAGAAAAUUAUGGAUCUGAGAAAAUCAUGGUAAAUUUAGUUAAGAACCAUACGAAAAACACCUAAGGAAUUGUACCUAAGUUUUCUGCAUUUGAUUA

miRBase

Precursor miRNA Structure(5'-3') 

---CGAUUA G                            C                       -AAUA   --A          AUAACAAA  U   G 
         G AGAAAACUUAGGUACAAUUCCUUAGGUG UUUUCGUAUGGUUCUUAAUUAAA     CAU   UUUUUUGGAU        CU UGA A
         | |||||||||||||||||||||||||||| |||||||||||||||||||||||     |||   ||||||||||        || ||| A
         C UCUUUUGAAUCCAUGUUAAGGAAUCCAC AAAAGCAUACCAAGAAUUGAUUU     GUA   AAAGAGUCUA        GG AUU U
AUUAGUUUA G                            A                       AAAUG   CUA          --------  U   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2606a      AAAAGCACUUAAGGAACGGUA
gma-miR2606b      AAAAGCACUUAAGGAACGGUA
mtr-miR2606a      UACAAUUCCUUAGGUGCUUUU
mtr-miR2606b      UACAAUUCCUUAGGUGCUUUU
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