TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR1510a-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

CGGAGGAUUAGGUAAAACAAC

miRBase

Precursor miRNA Sequence(5'-3')

AAAGUUGCUAUUGCAAUUGUUGUCUUACCCAUUCCUCCCAUCCCAUAAAUCUAUUAUAUGUACUCCAUCAUCAUAUGGAUCCACUCUUGUCUUAUGAUAAUAGAGUCGCAUGAUAGGAAUCUUGGAUCGGAGGAUUAGGUAAAACAACUAUUGCAUUAGGCUUU

miRBase

Precursor miRNA Structure(5'-3') 

     UG   U      U     C     CAU      C    CAUAAA        A  U    C  C      U    CCA 
AAAGU  CUA UGCAAU GUUGU UUACC   UCCUCC AUCC      UCUAUUAU UG ACUC AU AUCAUA GGAU   C
|||||  ||| |||||| ||||| |||||   |||||| ||||      |||||||| || |||| || |||||| ||||    
UUUCG  GAU ACGUUA CAACA AAUGG   AGGAGG UAGG      GGAUAGUA GC UGAG UA UAGUAU UCUG   U
     --   U      U     A     AUU      C    UUCUAA        C  -    A  A      -    UUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1510a-3p      UUGUUGUUUUACCUAUUCCACCC
gma-miR1510b-3p      -UGUUGUUUUACCUAUUCCACC-
mtr-miR1510a-3p      -CGGAGGAUUAGGUAAAACAAC-
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