TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1510b-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UGUUGUUUUACCUAUUCCACC

miRBase

Precursor miRNA Sequence(5'-3')

UUUAUGGAAGUGGAGGGAUAGGUAAAACAACUACUUCUGUAAAAGUAAUUGUUAUAGUUAGUUGUUGUUUUACCUAUUCCACCAAUUCCAUCUA

miRBase

Precursor miRNA Structure(5'-3') 

UUU      G   A                 U   -U      AAG 
   AUGGAA UGG GGGAUAGGUAAAACAAC ACU  CUGUAA   U
   |||||| ||| ||||||||||||||||| |||  ||||||   A
   UACCUU ACC CCUUAUCCAUUUUGUUG UGA  GAUAUU   U
AUC      A   A                 U   UU      GUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1510a-3p      UUGUUGUUUUACCUAUUCCACCC
gma-miR1510b-3p      -UGUUGUUUUACCUAUUCCACC-
mtr-miR1510a-3p      -CGGAGGAUUAGGUAAAACAAC-
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