TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1510a-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUGUUGUUUUACCUAUUCCACCC

miRBase

Precursor miRNA Sequence(5'-3')

UUAUGGAACUGGAGGGAUAGGUAAAACAAUGACUGCUGUAUAAGUAAUUGUUAUAGUUAGUUGUUGUUUUACCUAUUCCACCCAUUCCAUGUA

miRBase

Precursor miRNA Structure(5'-3') 

-U       CU  A                      -     -   G 
  UAUGGAA  GG GGGAUAGGUAAAACAAUGACUG CUGUA UAA U
  |||||||  || |||||||||||||||||||||| ||||| |||  
  GUACCUU  CC CCUUAUCCAUUUUGUUGUUGAU GAUAU GUU U
AU       AC  A                      U     U   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1510a-3p      UUGUUGUUUUACCUAUUCCACCC
gma-miR1510b-3p      -UGUUGUUUUACCUAUUCCACC-
mtr-miR1510a-3p      -CGGAGGAUUAGGUAAAACAAC-
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