TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR444a

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

UUGCUGCCUCAAGCUUGCUGC

miRBase

Precursor miRNA Sequence(5'-3')

AGGCACAAGUAGGACACCAACAUUACCUGCAAGCAAGACGCAAAAUUAAUAGAACAUCACCAUACUUGUGGCUUUCUUGCAAGUCGUGCAGUUGCUGCCUCAAGCUUGCUGCCU

miRBase

Precursor miRNA Structure(5'-3') 

     -     ---   A  C    ---  U  C      C   A     AAUUAAUAGA 
AGGCA CAAGU   AGG CA CAAC   AU AC UGCAAG AAG CGCAA          A
||||| |||||   ||| || ||||   || || |||||| ||| |||||           
UCCGU GUUCG   UCC GU GUUG   UG UG ACGUUC UUC GUGUU          U
     C     AAC   -  C    ACG  C  A      U   G     CAUACCACUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR444a           UUGCUGCCUCAAGCUUGCUGC-
tae-miR444b           UUGCUGCCUCAAGCUUGCUGC-
hvu-miR444a           UUGCUGCCUCAAGCUUGCUGC-
osa-miR444a-3p.1      UUGCUGCCUCAAGCUUGCUGC-
osa-miR444d.1         UUGCUGCCUCAAGCUUGCUGC-
bdi-miR444a           UUGCUGCCUCAAGCUUGCUGC-
osa-miR444b.1         -UGUUGUCUCAAGCUUGCUGCC
osa-miR444c.1         -UGUUGUCUCAAGCUUGCUGCC
                       ** ** **************