TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gra-miR8766

Organism

Gossypium raimondii

Species

Mature miRNA Sequence(5'-3')

UUAUUUUGGAAUUAGAAAAGUCGU

miRBase

Precursor miRNA Sequence(5'-3')

GUUAUGUUCAUUAUUUUGGAAUUAGAAAAGUCGUAUUCUUAACUUACGAAAUAUGACUUCCUUCUAAAGCCGAGAUAAUCAAAUAUUUACU

miRBase

Precursor miRNA Structure(5'-3') 

-  -U     -C          AA      --          - UUA 
 GU  AUGUU  AUUAUUUUGG  UUAGAA  AAGUCGUAUU C   A
 ||  |||||  ||||||||||  ||||||  |||||||||| |   C
 CA  UAUAA  UAAUAGAGCC  AAUCUU  UUCAGUAUAA G   A
U  UU     AC          GA      CC          A CAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gra-miR8766      UUAUUUUGGAAUUAGAAAAGUCGU
gma-miR1534      -UAUUUUGGGU---AAAUAGUCAU
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