TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gra-miR8675c

Organism

Gossypium raimondii

Species

Mature miRNA Sequence(5'-3')

AGGUGAUGAUGUGGUACAAUCUUA

miRBase

Precursor miRNA Sequence(5'-3')

AUGGCUUUUUGAAAUUGUGCCAUGUCAUUAUGUCCACUUUUUUUUUCUAGGUGAUGAUGUGGUACAAUCUUAAGAGUACCAC

miRBase

Precursor miRNA Structure(5'-3') 

A   -C       A                  GUCCACUU 
 UGG  UUUUUGA AUUGUGCCAUGUCAUUAU        U
 |||  ||||||| ||||||||||||||||||        U
 ACC  GAGAAUU UAACAUGGUGUAGUAGUG        U
C   AU       C                  GAUCUUUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gra-miR8675b      AGGUGAUGAUGUGGUACAAUCUCA
gra-miR8675c      AGGUGAUGAUGUGGUACAAUCUUA
hvu-miR6189       AGGUGAUGCUGUGGUG--AUCU--
                  ******** ******   ****