TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR6189

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

AGGUGAUGCUGUGGUGAUCU

miRBase

Precursor miRNA Sequence(5'-3')

GGGUUGAAAAAGGUGAUGCUGUGGUGAUCUACUUGCCGAUGCUCAUGGAGCUGCCUAUUGCAAUGCUUGCAUGCGCCCGCAUUGGUGCUGUUCACUCUGUCGUGUUUGCUGGCUUCUCUGCCGAUGCAAUAGCCCAGAGGAUCACUGACUGCAAGCCU

miRBase

Precursor miRNA Structure(5'-3') 

--------------------------------------GGGUUGAAAAAGGUGAUGCUGUGGUGAUCUACUU        ----U    -    --   C 
                                                                        GCCGAUGC     CAUG GAGC  UGC U
                                                                        ||||||||     |||| ||||  ||| A
                                                                        UGGUUACG     GUAC UUCG  ACG G
UCCGAACGUCAGUCACUAGGAGACCCGAUAACGUAGCCGUCUCUUCGGUCGUUUGUGCUGUCUCACUUGUCG        CCCGC    G    UA   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gra-miR8675b      AGGUGAUGAUGUGGUACAAUCUCA
gra-miR8675c      AGGUGAUGAUGUGGUACAAUCUUA
hvu-miR6189       AGGUGAUGCUGUGGUG--AUCU--
                  ******** ******   ****