TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gra-miR7484d

Organism

Gossypium raimondii

Species

Mature miRNA Sequence(5'-3')

AGAAUGACCGGUUUGCUCUUU

miRBase

Precursor miRNA Sequence(5'-3')

GUCAAAAAUUUCUUUCACUUCUAUUAUAAAAAACUGGUUUGGUUGACGGAAUAGUCAUAUACCACGUGUACCUCAUGUUAAUGUACAAAGACUAUUUUUUAACAAUAGAAAUUGAUGAAAUUUUUAAUAGAAUGACCGGUUUGCUCUUUUGAUCUAACG

miRBase

Precursor miRNA Structure(5'-3') 

--------------------------------------------------------GUCAAAAAUUUCUUUCACUUCUAUUAUAAAAAACUGGUUU   ---    GG 
                                                                                                GGU   UGAC  A
                                                                                                |||   ||||   
                                                                                                CCA   ACUG  A
GCAAUCUAGUUUUCUCGUUUGGCCAGUAAGAUAAUUUUUAAAGUAGUUAAAGAUAACAAUUUUUUAUCAGAAACAUGUAAUUGUACUCCAUGUGCA   UAU    AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR8019-3p      AAAAGAAUGACCUGGUUUGACUUG-
gra-miR7484d        ---AGAAUGACC-GGUUUGCUCUUU
                       ********* ******   *