TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR8019-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

AAAAGAAUGACCUGGUUUGACUUG

miRBase

Precursor miRNA Sequence(5'-3')

AGGGAAGCAGGUCAUUCUUUAUGAAACGGAGGGAGUAUUAUAAAAUAAUACUCCCUCCGUUUAAAAAAGAAUGACCUGGUUUGACUUG

miRBase

Precursor miRNA Structure(5'-3') 

---AGG   G             AUG                    
      GAA CAGGUCAUUCUUU   AAACGGAGGGAGUAUUAUA 
      ||| |||||||||||||   |||||||||||||||||| A
      UUU GUCCAGUAAGAAA   UUUGCCUCCCUCAUAAUAU 
GUUCAG   G             AAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR8019-3p      AAAAGAAUGACCUGGUUUGACUUG-
gra-miR7484d        ---AGAAUGACC-GGUUUGCUCUUU
                       ********* ******   *