TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gra-miR482c

Organism

Gossypium raimondii

Species

Mature miRNA Sequence(5'-3')

UUCCCAAAACCUCCAAUUCCAA

miRBase

Precursor miRNA Sequence(5'-3')

UCUGGAAAUUAUAGGAAUCGCGUUUUUGGGAAGAAGCACGAUCGAUCUGCAUCCGCCACUAAUUUCUUCCCAAAACCUCCAAUUCCAAUGAUUUCCAG

miRBase

Precursor miRNA Structure(5'-3') 

U           A     -C C U            -------------   C  U 
 CUGGAAAUUAU GGAAU  G G UUUUGGGAAGAA             GCA GA C
 ||||||||||| |||||  | | ||||||||||||             ||| ||  
 GACCUUUAGUA CCUUA  C C AAAACCCUUCUU             CGU CU U
-           A     AC U C            UAAUCACCGCCUA   -  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppe-miR482a-3p      UUUCCGAAACCUCCCAUUCCAA
gra-miR482c         UUCCCAAAACCUCCAAUUCCAA
                    ** ** ******** *******