TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR482a-3p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UUUCCGAAACCUCCCAUUCCAA

miRBase

Precursor miRNA Sequence(5'-3')

AAGAGGAAAUGGAAAUUUUUGGGUGAGAGGUUGCCGGAAAGAAUACAUAAUAUUCAUCCAAGUUUUGAUAUUAAAUUCUUUCCGAAACCUCCCAUUCCAAUGAUUUCCAGCUAUUCCUUU

miRBase

Precursor miRNA Structure(5'-3') 

A       ---A        U     -  A      GC          ACA      U  UCC 
 AGAGGAA    UGGAAAUU UUGGG UG GAGGUU  CGGAAAGAAU   UAAUAU CA   A
 |||||||    |||||||| ||||| || ||||||  ||||||||||   |||||| ||   A
 UUUCCUU    ACCUUUAG AACCU AC CUCCAA  GCCUUUCUUA   AUUAUA GU   U
-       AUCG        U     U  C      -A          --A      -  UUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppe-miR482a-3p      UUUCCGAAACCUCCCAUUCCAA
gra-miR482c         UUCCCAAAACCUCCAAUUCCAA
                    ** ** ******** *******