TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gra-miR167c

Organism

Gossypium raimondii

Species

Mature miRNA Sequence(5'-3')

UCAGAUGAAGCUGCCAGCAUGA

miRBase

Precursor miRNA Sequence(5'-3')

UGCUCCAUCAUCAGAUGAAGCUGCCAGCAUGAUCUUAAUUUCCCUCUGUUUUAUCGAGGAAAAAUCAGAUCAUGUGGCAGUUUCACCUGUUGCUGCUUGCAC

miRBase

Precursor miRNA Structure(5'-3') 

-   -UC  U  U   A           G        UAA   C    UGU 
 UGC   CA CA CAG UGAAGCUGCCA CAUGAUCU   UUU CCUC   U
 |||   || || ||| ||||||||||| ||||||||   ||| ||||   U
 ACG   GU GU GUC ACUUUGACGGU GUACUAGA   AAA GGAG   U
C   UUC  C  U   C           -        CUA   A    CUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR167h      ----AUCAUGCUGGCAGCUUCAACUGGU
gma-miR167i      -----UCAUGCUGGCAGCUUCAACUGGU
gra-miR167c      UCAGAUGAAGCUGCCAGCAUGA------
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