TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR167h

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AUCAUGCUGGCAGCUUCAACUGGU

miRBase

Precursor miRNA Sequence(5'-3')

AACUACUAGGUGAAACUGCCACAUGAUCUGAUCUUUCCACAGCAAGUGAGGGAAGUUAAGAUCAUGCUGGCAGCUUCAACUGGUAGUGG

miRBase

Precursor miRNA Structure(5'-3') 

-A        G    A      -        GAU      A  G 
  ACUACUAG UGAA CUGCCA CAUGAUCU   CUUUCC CA C
  |||||||| |||| |||||| ||||||||   |||||| || A
  UGAUGGUC ACUU GACGGU GUACUAGA   GAAGGG GU U
GG        A    C      C        AUU      A  G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR167h      ----AUCAUGCUGGCAGCUUCAACUGGU
gma-miR167i      -----UCAUGCUGGCAGCUUCAACUGGU
gra-miR167c      UCAGAUGAAGCUGCCAGCAUGA------
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