TarDB

Precursor miRNA Sequence(5'-3')

UCCUCAUCUCCUCUAACCGCCAACUGCAAAUGCCUUGGAGUUAUCCUCUUCACUUUCAAAUCCUUGUUAGUGUUUUCGGCCAACUGAAGAACCUCAGUAGUUAGGCAUUCAAGGAUUGAAGUCGUGUAGACAACAUCAGUCGCACCAACAGUACCAUGUGCAGAAACUCUGGUCUUAAGUUGCUUGUGAAUACGAGCCACUGGAAACUGAAAGAAACAAAGAAACAAUAUCAGUAUAAAAUUUCAUCAAAUUAGACUACAAAAAAUGAAAUUUCUUUGUUUAUUUCAAUUUCUAGUGGGUCGUAUUCACAUACAACUCAAGACUAGAGUAUCUACAACAUGGUCUACUUGGUGCUAUUGUUGUUGACUACACGCCUUCAAUCCUAAAGUGCCUAAUUUCAUAGGUUAUUGAGUUACUUAGAAACACAAGCAAUGAUAAGAAAAUGAAGAGGAUUACUCCAAUGCAUUGAUAGUUGGUGAUCGCAGGAGAUAAGGA

miRBase

Precursor miRNA Structure(5'-3')

    C       CUAAC         CA     C       U          C    AA   C     A       CGGCC    G  G     CA U           CA          U       A     U    C       -C  U       - C   A           A     CU           G          C     G          ACAAUAUCAGUAUAAA       CAAAUUAG 
UCCU AUCUCCU     CGCCAACUG  AAUGC UUGGAGU AUCCUCUUCA UUUC  AUC UUGUU GUGUUUU     AACU AA AACCU  G AGUUAGGCAUU  AGGAUUGAAG CGUGUAG CAACA CAGU GCACCAA  AG ACCAUGU G AGA ACUCUGGUCUU AGUUG  UGUGAAUACGA CCACUGGAAA UGAAA AAACAAAGAA                AUUUCAU        A
|||| |||||||     |||||||||  ||||| ||||||| |||||||||| ||||  ||| ||||| |||||||     |||| || |||||  | |||||||||||  |||||||||| ||||||| ||||| |||| |||||||  || ||||||| | ||| ||||||||||| |||||  ||||||||||| |||||||||| ||||| ||||||||||                |||||||         
AGGA UAGAGGA     GUGGUUGAU  UUACG AACCUCA UAGGAGAAGU AAAG  UAG AACGA CACAAAG     UUGA UU UUGGA  C UUAAUCCGUGA  UCCUAACUUC GCACAUC GUUGU GUUA CGUGGUU  UC UGGUACA C UCU UGAGAUCAGAA UCAAC  ACACUUAUGCU GGUGAUCUUU ACUUU UUUGUUUCUU                UAAAGUA        A
    A       CGCUA         AG     U       U          A    AA   U     A       AUUCA    G  A     UA U           AA          C       A     U    U       CA  -       A A   A           C     AU           G          A     A          ----------------       AAAAACAU

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.