TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR2275c-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

UUCAGUUUCCUCUAAUAUCUCA

miRBase

Precursor miRNA Sequence(5'-3')

AGAGAGAUGUUGAUAUGUGUCAUUUGAAGUGAGGAUUAGAGGGACUUGAACCAUUCAUAGCUUGUUCGGUUAUGUCUGGAUCGAAGAGGGUUGGAAGGUCCUUUCUAGUUAAAAUUAAAUAGAAAGAGAUUGAAUCCCUUUAACCUCCUAUCCAGAUGUGACCAAACAAACUCUCAUUGGGAGUAAAAGGGGUUCAGUUUCCUCUAAUAUCUCAUCUUAAAUGGCCCAUCAUCUCCU

miRBase

Precursor miRNA Structure(5'-3') 

-------AGAGAGAUGUUGAUAUGUGUCAUUUGAAGUGAGGAUUAGAGGGACUUGAACCAUUCAUAGC     C              CGA  A        A  ------  -       G   A 
                                                                    UUGUU GGUUAUGUCUGGAU   AG GGGUUGGA GG      UC CUUUCUA UUA A
                                                                    ||||| ||||||||||||||   || |||||||| ||      || ||||||| |||  
                                                                    AACAA CCAGUGUAGACCUA   UC UCCAAUUU CC      AG GAAAGAU AAU U
UCCUCUACUACCCGGUAAAUUCUACUCUAUAAUCUCCUUUGACUUGGGGAAAAUGAGGGUUACUCUCA     A              ---  C        C  UAAGUU  A       A   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR2275b-3p      UUCAGUUUCCUCUAAUAUCUCA
zma-miR2275c-3p      UUCAGUUUCCUCUAAUAUCUCA
bdi-miR2275b         UUCAGUUUCUUCUAAUAUCUCA
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