TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR2275b-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

UUCAGUUUCCUCUAAUAUCUCA

miRBase

Precursor miRNA Sequence(5'-3')

CCAUCUGAAGUGAGGAUUAGAGGCAACUGAACCAUCAUCUAUUGCAAAGGUUCAGUUUCCUCUAAUAUCUCAUCUCGAAUGG

miRBase

Precursor miRNA Structure(5'-3') 

    C   A      -        C         AUCAUC 
CCAU UGA GUGAGG AUUAGAGG AACUGAACC      U
|||| ||| |||||| |||||||| |||||||||      A
GGUA GCU UACUCU UAAUCUCC UUGACUUGG      G
    A   C      A        U         AAACGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR2275b-3p      UUCAGUUUCCUCUAAUAUCUCA
zma-miR2275c-3p      UUCAGUUUCCUCUAAUAUCUCA
bdi-miR2275b         UUCAGUUUCUUCUAAUAUCUCA
                     ********* ************