TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR171i-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

UGUUGGCACGGUUCAAUCAAA

miRBase

Precursor miRNA Sequence(5'-3')

CUGGUUGGCUGAGAGAGUGCGAUGUUGGCACGGUUCAAUCAAAUCGCCGGCCGGGUUGACUUGUUGAUUGAGCCGUGCCAAUAUCACAACCUUCUCUAGCCUAG

miRBase

Precursor miRNA Structure(5'-3') 

CUGGUU    -     A  - C                      ---A   -  G 
      GGCU GAGAG GU G GAUGUUGGCACGGUUCAAUCAA    UCG CC G
      |||| ||||| || | ||||||||||||||||||||||    ||| || C
      CCGA CUCUU CA C CUAUAACCGUGCCGAGUUAGUU    AGU GG G
---GAU    U     C  A A                      GUUC   U  G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR171f-5p      UGUUGGCAUGGUUCAAUCAAA
zma-miR171i-5p      UGUUGGCACGGUUCAAUCAAA
csi-miR171c-5p      UGUUGGAACGGCUCAAUCAAA
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