TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR171f-5p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGUUGGCAUGGUUCAAUCAAA

miRBase

Precursor miRNA Sequence(5'-3')

GGGAGAGUGCGAUGUUGGCAUGGUUCAAUCAAACCGGGCAAACUUAUGCACUAGCUAAGCAAGAUGCAGGGAUAUGCAGUAUGGUUUUGUUUGGUCUGAUUGAGCCGUGCCAAUAUCACAAGCUUGC

miRBase

Precursor miRNA Structure(5'-3') 

 G   AG  C                     A          C      ACUAGCUAAGCAA 
G GAG  UG GAUGUUGGCAUGGUUCAAUCA ACCGGGCAAA UUAUGC             G
| |||  || ||||||||||||||||||||| |||||||||| ||||||             A
C UUC  AC CUAUAACCGUGCCGAGUUAGU UGGUUUGUUU GGUAUG             C
 G   GA  A                     C          U      ACGUAUAGGGACG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR171f-5p      UGUUGGCAUGGUUCAAUCAAA
zma-miR171i-5p      UGUUGGCACGGUUCAAUCAAA
csi-miR171c-5p      UGUUGGAACGGCUCAAUCAAA
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