TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR167a-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GAUCAUGCAUGACAGCCUCAUU

miRBase

Precursor miRNA Sequence(5'-3')

UGCUCUUGCGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUUGGUUGGCACCAUAUUAGCAGGCGUCCACGCACAGCUAGACUAGAGUGGCCUCGCGCGCUCUCGUCUGGUCUGUGUCUCGCUUUGUGCCUGCAAAUCGUUGUUAGAUCAUGCAUGACAGCCUCAUUCCUUCACAAUUCUGGGGC

miRBase

Precursor miRNA Structure(5'-3') 

U     -----  C   U      A    C  -            UC       GUU     CAUAUUAGC     UCCAC      -      U      -    
 GCUCU     UG GAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUUUG   GGCAC         AGGCG     GCACAG CUAGAC AGAGUG GCC 
 |||||     || ||| |||||| |||| || ||||||||||||  |||||||   |||||         |||||     |||||| |||||| |||||| || U
 CGGGG     AC CUU CUUACU CGAC GU CGUACUAGAUUG  GCUAAAC   CCGUG         UUCGC     UGUGUC GGUCUG UCUCGC CGC 
-     UCUUA  A   C      C    A  A            UU       -GU     --------U     ---UC      U      C      G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR167a-3p      -AUCAUGCAUGACAGCCUCAUUU
zma-miR167a-3p      GAUCAUGCAUGACAGCCUCAUU-
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