TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR167a-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

AUCAUGCAUGACAGCCUCAUUU

miRBase

Precursor miRNA Sequence(5'-3')

UAGUGUGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUAAUCGGCACUGUUGGCGUACAGUCGAUUGACUAAUCGUCAGAUCUGUGUGUGUAAAUCACUGUUAGAUCAUGCAUGACAGCCUCAUUUCUUCACACUG

miRBase

Precursor miRNA Structure(5'-3') 

         U      A    C  -            UC     A  CG    --UG      UAC    G 
UAGUGUGAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUU AU  GCAC    UUGGCG   AGUC A
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
GUCACACUU UUUACU CGAC GU CGUACUAGAUUG  ACUAA UG  UGUG    GACUGC   UCAG G
         C      C    A  A            UC     A  UG    UCUA      UAA    U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR167a-3p      -AUCAUGCAUGACAGCCUCAUUU
zma-miR167a-3p      GAUCAUGCAUGACAGCCUCAUU-
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