TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR166l-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GAAUGGAGGCUGGUCCAAGA

miRBase

Precursor miRNA Sequence(5'-3')

AAAGAACGGGAGGAGGGUUUCUGGAAUGGAGGCUGGUCCAAGAUCCUUAGGUGUUAAAGCAUUAUAUUGCCUUGUUUCUGGUUUUGUGUUUGAGAUCUCGGACCAGGCUUCAUUCCUCAAACCCACGCUCCCGACAC

miRBase

Precursor miRNA Structure(5'-3') 

AAAGAA      - A      CU         G       A     C    GUGUUAAAGCAUUAUAUU 
      CGGGAG G GGGUUU  GGAAUGGAG CUGGUCC AGAUC UUAG                  G
      |||||| | ||||||  ||||||||| ||||||| ||||| ||||                  C
      GCCCUC C CCCAAA  CCUUACUUC GACCAGG UCUAG AGUU                  U
--CACA      G A      CU         G       C     -    UGUGUUUUGGUCUUUGUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR166g-5p      ---AAUGGAGGCUGAUCCAAGAUC--
zma-miR166l-5p      --GAAUGGAGGCUGGUCCAAGA----
gma-miR5042-3p      -----UGGGGCUUGAUCCAAGAUAGG
gma-miR5042-5p      UAUCUUGGAUCACAGCCCCAUU----
                         ***        ** *