TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR5042-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UAUCUUGGAUCACAGCCCCAUU

miRBase

Precursor miRNA Sequence(5'-3')

AAAGAUGCAAAAUUUUCAAGUGUUCAAGUGUUGACAACUAUUUUUAGCUUUCAAACCCCCUAUCUUGGAUCACAGCCCCAUUGCCUAUCAUGGGGCUUGGAGUGGGGCUUGAUCCAAGAUAGGAAGCUGGAAAGCUUGAAAGUAUGAACUG

miRBase

Precursor miRNA Structure(5'-3') 

AAAGAUGCAAAAUUUUCAAGUGUUCAAGUGUUGACAACUA          UCAAACCC              C         ----    AU 
                                        UUUUUAGCUU        CCUAUCUUGGAUCA AGCCCCAUU    GCCU  C
                                        ||||||||||        |||||||||||||| |||||||||    ||||   
                                        AAAGGUCGAA        GGAUAGAACCUAGU UCGGGGUGA    CGGG  G
----------------------GUCAAGUAUGAAAGUUCG          --------              -         GGUU    GU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR166g-5p      ---AAUGGAGGCUGAUCCAAGAUC--
zma-miR166l-5p      --GAAUGGAGGCUGGUCCAAGA----
gma-miR5042-3p      -----UGGGGCUUGAUCCAAGAUAGG
gma-miR5042-5p      UAUCUUGGAUCACAGCCCCAUU----
                         ***        ** *