TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR166h-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGAAUGACGUCCGGUCCGAAC

miRBase

Precursor miRNA Sequence(5'-3')

GGGGAAUGACGUCCGGUCCGAACGAGCCACGGCUGCUGCUGCGCCGCCGCGGGCUUCGGACCAGGCUUCAUUCCCC

miRBase

Precursor miRNA Structure(5'-3') 

         C   C       ACG    -A    U  UG 
GGGGAAUGA GUC GGUCCGA   AGCC  CGGC GC  C
||||||||| ||| |||||||   ||||  |||| ||   
CCCCUUACU CGG CCAGGCU   UCGG  GCCG CG  C
         U   A       ---    GC    C  CG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR166j-5p      -GAAUGACGUCCGGUCUGAAGA
zma-miR166h-5p      GGAAUGACGUCCGGUCCGAAC-
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