TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR166j-5p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GAAUGACGUCCGGUCUGAAGA

miRBase

Precursor miRNA Sequence(5'-3')

UGAUCCAUGGCUGUUGAGAGGAAUGACGUCCGGUCUGAAGAUCGCCGUCCCCAGGCGGUGGCUUCGGACCAGGCUUCAUUCCCCAUGACUCAUGGAACCC

miRBase

Precursor miRNA Structure(5'-3') 

-UGA       CU    A A       C   C         A        C 
    UCCAUGG  GUUG G GGAAUGA GUC GGUCUGAAG UCGCCGUC C
    |||||||  |||| | ||||||| ||| ||||||||| ||||||||  
    AGGUACU  CAGU C CCUUACU CGG CCAGGCUUC GGUGGCGG G
CCCA       --    A C       U   A         -        A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR166j-5p      -GAAUGACGUCCGGUCUGAAGA
zma-miR166h-5p      GGAAUGACGUCCGGUCCGAAC-
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