TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR166g-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGAAUGUUGUCUGGUUGGAGA

miRBase

Precursor miRNA Sequence(5'-3')

GGGGAAUGUUGUCUGGUUGGAGACCUAACACCRCGAAUUAAUCAUCCAUGCCAUGGAAGCAGCAUAUGCCCGCCUGCAUCUAUCCAUGCAUGAUGGUGGAAGGUUUCGGACCAGGCUUCAUUCCCC

miRBase

Precursor miRNA Structure(5'-3') 

        UU        G       AA    RCGAAUUA     C    CC     A    - AUA 
GGGGAAUG  GUCUGGUU GAGACCU  CACC        AUCAU CAUG  AUGGA GCAG C   U
||||||||  |||||||| |||||||  ||||        ||||| ||||  ||||| |||| |    
CCCCUUAC  CGGACCAG CUUUGGA  GUGG        UAGUA GUAC  UAUCU CGUC G   C
        UU        G       AG    --------     C    -C     A    C CCC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR166g-5p      -GGAAUGUUGUCUGGUUGGAGA-
bdi-miR166d-5p      -GGAAUGUUGUCUGGUUGGAGA-
csi-miR166c-5p      GGGAAUGUUGUCUGGUUCGAG--
osa-miR166c-5p      -GGAAUGUUGUCUGGUCCGAG--
csi-miR166g-5p      --GAAUGCUGUCUGGUUCGAGAC
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