TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR166c-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

GGGAAUGUUGUCUGGUUCGAG

miRBase

Precursor miRNA Sequence(5'-3')

UUCCUCCUCGAUCAUACAUGAACGGUUGAGGGGAAUGUUGUCUGGUUCGAGAUCACUCGUGGACGAAUUAAUUAAUAACUUAUUGUCUUUUGAAUGAUUUCGGACCAGGCUUCAUUCCCCCCAACUCAGUUUAAUUGC

miRBase

Precursor miRNA Structure(5'-3') 

UUCCUCCUCGAUCAUACA     --     A        UU                C   -U      AUUAAUU 
                  UGAAC  GGUUG GGGGAAUG  GUCUGGUUCGAGAUCA UCG  GGACGA       A
                  |||||  ||||| ||||||||  |||||||||||||||| |||  ||||||        
                  AUUUG  UCAAC CCCCUUAC  CGGACCAGGCUUUAGU AGU  UCUGUU       A
-------------CGUUA     AC     C        UU                A   UU      AUUCAAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR166g-5p      -GGAAUGUUGUCUGGUUGGAGA-
bdi-miR166d-5p      -GGAAUGUUGUCUGGUUGGAGA-
csi-miR166c-5p      GGGAAUGUUGUCUGGUUCGAG--
osa-miR166c-5p      -GGAAUGUUGUCUGGUCCGAG--
csi-miR166g-5p      --GAAUGCUGUCUGGUUCGAGAC
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