TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR160d-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GCGUGCGUGGAGCCAAGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

GGCCAGGGGCGGGAUCGAUAUGCCUGGCUCCCUGUAUGCCACUCGCAUGGCUGCCAACUCAUCAUGCAUACACUGCUAGCUAGUCGUUGGCUCCACUGCGGAUGGCGUGCGUGGAGCCAAGCAUGACCGAUCAUCUCCUCCU

miRBase

Precursor miRNA Structure(5'-3') 

-  CC     CGG     -A     C       C         C     -   CU      --UCAUCAU   U 
 GG  AGGGG   GAUCG  UAUGC UGGCUCC UGUAUGCCA UCGCA UGG  GCCAAC         GCA A
 ||  |||||   |||||  ||||| ||||||| ||||||||| ||||| |||  ||||||         ||| C
 CC  UCCUC   CUAGC  GUACG ACCGAGG GCGUGCGGU GGCGU ACC  CGGUUG         CGU U
U  --     -UA     CA     A       U         A     C   -U      CUGAUCGAU   C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160e-3p      GCGUGCGAGGUGCCAAGCAUG
zma-miR160f-3p      GCGUGCGAGGUGCCAGGCAUG
bdi-miR160a-3p      GCGUGCGAGGAGCCAAGCAUG
zma-miR160d-3p      GCGUGCGUGGAGCCAAGCAUG
csi-miR160c-3p      GCGUGCGAGGAGCCAUGCAUG
zma-miR160a-3p      GCGUGCAAGGGGCCAAGCAUG
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