TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR160c-3p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

GCGUGCGAGGAGCCAUGCAUG

miRBase

Precursor miRNA Sequence(5'-3')

UGAUAUAUAGUAUGCCUGGCUCCCUGUAUGCUUUUUGCAAAGCCCAUCAGAAGAUUGGUGGUCUUGGCGGAUAGCGUGCGAGGAGCCAUGCAUGCUAAAUUUAG

miRBase

Precursor miRNA Structure(5'-3') 

UGAUAUA        C       C        U     A   C      GA 
       UAGUAUGC UGGCUCC UGUAUGCU UUUGC AAG CCAUCA  A
       |||||||| ||||||| |||||||| ||||| ||| ||||||   
       AUCGUACG ACCGAGG GCGUGCGA AGGCG UUC GGUGGU  U
GAUUUAA        U       A        U     G   U      UA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160e-3p      GCGUGCGAGGUGCCAAGCAUG
zma-miR160f-3p      GCGUGCGAGGUGCCAGGCAUG
bdi-miR160a-3p      GCGUGCGAGGAGCCAAGCAUG
zma-miR160d-3p      GCGUGCGUGGAGCCAAGCAUG
csi-miR160c-3p      GCGUGCGAGGAGCCAUGCAUG
zma-miR160a-3p      GCGUGCAAGGGGCCAAGCAUG
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