TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vvi-miR3634-3p

Organism

Vitis vinifera

Species

Mature miRNA Sequence(5'-3')

UUUCCGACUCGCACUCAUGCCGU

miRBase

Precursor miRNA Sequence(5'-3')

AGGGUGGAGUUUUGUGAAGCUUAUGGCAUAUGUGUGACGGAAAGAAAGGUGUUUAAAUCAUGUCUUUCCGACUCGCACUCAUGCCGUUGGUUUCAGAUCACUCCUCCCU

miRBase

Precursor miRNA Structure(5'-3') 

    U     UU G       U       AU      --        -AA   GU 
AGGG GGAGU  U UGAAGCU AUGGCAU  GUGUGA  CGGAAAGA   GGU  U
|||| |||||  | ||||||| |||||||  ||||||  ||||||||   |||   
UCCC CCUCA  A ACUUUGG UGCCGUA  CACGCU  GCCUUUCU   CUA  A
    U     CU G       U       CU      CA        GUA   AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR3634-3p      UUUCCGACUCGCACUCAUGCCGU
atr-miR8558b        UUUCCGA-UCCCGCCCAUGCCGU
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