TarDB

Precursor miRNA Sequence(5'-3')

GUGCGAAGGGGGCUCUUGCAGGCGGAGGACAUGGUGGAAUGGUGAAGAGGCGGUAUGGUAGCCGUUGGUGUAUGGCUGGGCAGAAUUUGGAAACCCUAGUUUUGGUUUUUACGGGAAACCAGGAUUAGGAAACUCUAAUUUUGGCUCUUACCGGAAAUCCAGUAUUAGGAGAACCUAAUUUGGGUGUCUUACAGGAAACCAUGGUUUCCGAUCCCGCCCAUGCCGUGUACCCAUGGCUUCUAUCCCCUUUUCAUAACCCACUUAAGUUUCCCGAUCCCGCCCUUGCCGUUUACGCAC

miRBase

Precursor miRNA Structure(5'-3')

     A   G   UCUU  A  --   A    -AU     AAUG         C  U    U      U          -     AGAAU        CCUAGUUUUGGUUUUUACGGGAAACCAGGAUUAGGAAACUCUAAUUUUGGCUC 
GUGCG AGG GGC    GC GG  CGG GGAC   GGUGG    GUGAAGAGG GG AUGG AGCCGU GGUGUAUGGC UGGGC     UUGGAAAC                                                     U
||||| ||| |||    || ||  ||| ||||   |||||    ||||||||| || |||| |||||| |||||||||| |||||     ||||||||                                                     U
CACGC UUU CCG    CG CC  GCC UUUG   UCACC    UACUUUUCC CC UAUC UCGGUA CCAUGUGCCG ACCCG     AGCCUUUG                                                     C
     A   G   UUCC  C  UA   C    AAU     -CAA         -  -    U      C          U     -CCCU        GUACCAAAGGACAUUCUGUGGGUUUAAUCCAAGAGGAUUAUGACCUAAAGGCC

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.