TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vvi-miR3633b-3p

Organism

Vitis vinifera

Species

Mature miRNA Sequence(5'-3')

GUUCCCAUGCCAUCCAUUCCUA

miRBase

Precursor miRNA Sequence(5'-3')

UCCCGGAGGCCCAUGGGAAUGGGUGGCUGGGAUCUAAUGUUUCUUCACAUCAUGUAGAUGUGUCAAAAAGCUGAGUUGGUUCCCAUGCCAUCCAUUCCUAUCGUUCCCGGGA

miRBase

Precursor miRNA Structure(5'-3') 

      A   CC               -     U     ---    --CUU      A 
UCCCGG GGC  AUGGGAAUGGGUGGC UGGGA CUAAU   GUUU     CACAUC U
|||||| |||  ||||||||||||||| ||||| |||||   ||||     |||||| G
AGGGCC UUG  UAUCCUUACCUACCG ACCCU GGUUG   CGAA     GUGUAG G
      C   -C               U     U     AGU    AAACU      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR3633b-3p      GUUCCCAUGCCAUCCAUUCCUA
mes-miR2118          GUUCCCAUGCCACCCAUUUCUA
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