TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR2118

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

GUUCCCAUGCCACCCAUUUCUA

miRBase

Precursor miRNA Sequence(5'-3')

GAUUAAGCCUCCCAGAUGCAGAGUGGAAAUGGGUGGAUGGGAGUGAAAUUUAAAGAGUCUGGUGAUAGAAAUCGUUCCCAUGCCACCCAUUUCUAUUCUUUCUGGGGGUUUCUCCCUUUU

miRBase

Precursor miRNA Structure(5'-3') 

-----GAUU     U      UGC                 -          AAUUUAAAGAG    G 
         AAGCC CCCAGA   AGAGUGGAAAUGGGUGG AUGGGAGUGA           UCUG U
         ||||| ||||||   ||||||||||||||||| ||||||||||           ||||  
         UUUGG GGGUCU   UCUUAUCUUUACCCACC UACCCUUGCU           AGAU U
UUUUCCCUC     -      --U                 G          ---------AA    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR3633b-3p      GUUCCCAUGCCAUCCAUUCCUA
mes-miR2118          GUUCCCAUGCCACCCAUUUCUA
                     ************ ***** ***