TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vvi-miR3633a-5p

Organism

Vitis vinifera

Species

Mature miRNA Sequence(5'-3')

GGAAUGGAUGGUUAGGAGAG

miRBase

Precursor miRNA Sequence(5'-3')

GAAAUGGGAGAUGAAUAUUUCGAAAGCAAUAGGAAUGGAUGGUUAGGAGAGAACUCCUCUUAUAUAUUUCUUCAUCUUCUCCGCCGGAGAUGUGGAAGUGCAGUUGGUUCCUAUACCACCCAUUCCCUACGGUUUUCGAAAUUUUCUCCCUUUUC

miRBase

Precursor miRNA Structure(5'-3') 

    U      UGAAU           AA    -     A    -      AG    CCUCUUAUA       U       UC 
GAAA GGGAGA     AUUUCGAAAGC  UAGG AAUGG UGGU UAGGAG  AACU         UAUUUCU CAUCUUC  C
|||| ||||||     |||||||||||  |||| ||||| |||| ||||||  ||||         ||||||| |||||||   
CUUU CCCUCU     UAAAGCUUUUG  AUCC UUACC ACCA AUCCUU  UUGA         GUGAAGG GUAGAGG  C
    U      ---UU           GC    C     C    U      GG    --------C       U       CC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR7729a-3p      AGCAAUGGUGGUGGUUUGGAGGAG
bdi-miR7729b-3p      AGCAAUGGUGGUGGUUUGGAGGAG
vvi-miR3633a-5p      -GGAAUG--GAUGGUUAGGAGAG-
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