TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR7729a-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

AGCAAUGGUGGUGGUUUGGAGGAG

miRBase

Precursor miRNA Sequence(5'-3')

CUCGAUCUACUGUUUUCAUAGGCCAUGUAGAGCUAAUUUUGUGGUGCAAAGUUGGAGCAAUGGUGGUGGUUUGGAGGAGUUUGGAGGUGG

miRBase

Precursor miRNA Structure(5'-3') 

----   G UCU   G      -UAG     -GUA AG            
    CUC A   ACU UUUUCA    GCCAU    G  CUAAUUUUGUG 
    ||| |   ||| ||||||    |||||    |  |||||||||| G
    GAG U   UGA GGAGGU    UGGUG    C  GGUUGAAACGC 
GGUG   G --U   -      UUGG     GUAA GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR7729a-3p      AGCAAUGGUGGUGGUUUGGAGGAG
bdi-miR7729b-3p      AGCAAUGGUGGUGGUUUGGAGGAG
vvi-miR3633a-5p      -GGAAUG--GAUGGUUAGGAGAG-
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